Luca Beltrame

Considering bumping CheckQC

6

### Description of feature Since https://github.com/Molmed/checkQC/releases/tag/v4.0.6, CheckQC supports the (fairly popular) NextSeq 500/550 instrument. It may be worthwhile to update it (lives in nf-core, but this can be used as...

At the moment it is unclear if the borg backup role (or other backup methods) covers PostGIS. If that is the case, or even if it is not, it should...

### Feature description SD.Next had this feature for a while, but it's deep hidden in the Control workflow, and I'm not sure it even works correctly. For those who don't...

### Description of the bug Discussed with @maxulysse on Slack: 1. Spark MarkDuplicates wants name sorted output, so BAMs are made as such 2. If requesting BAM output instead of...

### Have you checked the docs? - [x] [nf-core website: troubleshooting](https://nf-co.re/usage/troubleshooting) - [x] [nf-core modules documentation](https://nf-co.re/docs/contributing/modules) ### Description of the bug One of the optional outputs (`chr_statistics`) looks for the...

Given that PureCN outputs that weighted PSCBS will be used when weights are there, even if the regular PSCBS package is found, I wonder if the fork mentioned in the...