Luca Beltrame

Oncoplot: order by variant but only display CNs

3

The reason for this stems from a request from the wet lab people that called the oncoprints with CN and mutations overlapped "confusing" (there are a lot of events in...

For cleanliness, it would be nice to have nested menus also by specifying stuff in `navigation.yml`, in a similar fashion of what the About and posts links do.

While the defaults work perfectly with abstract images, other types of images get cropped awkwardly. I had to look up the CSS to see that the theme sets a minimum...

E2EE: Image from clipboard data / upload is sent unencrypted

8

### System: - Nheko version: 0.4.3-74396e9 - Installation method: Source - Operating System: openSUSE Tumbleweed - Qt version: 5.11 - C++ compiler: GCC 8.1 - Desktop Environment: Plasma 5.13.80 ###...

No more non-OSX JARs and no build instructions

2

As the subject says. I wanted to test this client, but I was unable to do so as there are no more Linux builds since 29th Sep 2019. Additionally, there...

Ratios shifted upwards in CN segment plot

5

I have a sample that is supposed to be mostly copy number neutral (no large events detected in a sWGS study). However, when I run the same sample (done with...

Provide a list of TitanCall abbreviations in an easily-accessible form

9

As the subject says, having to hunt a supplementary table in a manuscript to see what an abbreviation indicates is awkward (and, IIRC, there is no "supplementary table 2" in...

As subject says.

No license

2

There is no license neither in the repository nor in the source files. This makes the software non-distributable at the very best.

RFC: Investigate the use of query length size selection to improve sensitivity

1

(Posting here because the forked repo doesn't have issues: @gavinha, you might want to enable them) A couple of papers suggested that selecting DNA fragments that match nucleosome size, or...