Luca Beltrame

Actually, it can be already done, so closing. Sorry for the noise.

Spoke too soon. `cutadapt` has a `-l` option (similar to `CROP`) which is missing from atropos: > To shorten each read down to a certain length, use the --length option...

That would be great indeed. I'm trying to move away from trimmomatic where possible because atropos is much faster.

I disagree: I followed the API docs, yet it generated a completely wrong header for Disposition-Notification-To. Code: ``` python formatted_receipt_addr = format_addresses( ['[email protected]'], "Disposition-Notification-To", "utf-8").encode() extra_headers = [("Disposition-Notification-To", formatted_receipt_addr)] #...

The device manager reports the NFC reader as NXP Semiconductors(Proximity) NXP Near Field Proximity Provider. Its "location" is under an I2C controller, "Serial I/O I2C Intel Host Controller - 9D60"...

Thanks, I've subscribed to the Bioconductor issue as well.

Yes, that would work nicely.

I assume this is due how to htslib does things? (but in general this issue is not limited to htslib, *no* wrapper, including older stuff like PyVCF, does this, although...

Quaternion does not work with pantalaimon unfortunately, because it "detects" rooms as E2EE and refuses to send messages, even with pantalaimon proxying them. That happened a while ago, not sure...

The reason is in https://github.com/PoisonAlien/maftools/blob/a62aa15ee561363615bf17d8d1fff3c9a7833d1e/R/get_lp_data.R#L28 If there's *another* column called `AAChange`, it is *not* replaced, and therefore the code gets confused and picks the wrong one, causing parsing errors.