Julie L

Mitochondrial reads in chloroplast assembly

9

I assembled the chloroplast genome in order to then assemble the mitochondrial genome of a plant. For the mitochondrial genome, I used the COXIII gene as a seed. But my...

Post-processing of contigs

7

My output contains 9 contigs when assembling the chloroplast genome. They have the following headers: >Contig01+58914932 >Contig02+152441912 >Contig02+152441912 >Contig03+76160031 >Contig03+76160031 >Contig03+76160031 >Contig03+76160031 >Contig03+76160031 >Contig03+76160031 My question is why so many...

quick option error: no reads with reasonable match

7

(I see that this question has been asked by others before here and on the Google Group but I don't think it's actually been answered). I'm using MITObim to assemble...

Are there any resources that walk through how to interpret the output plots in the html file? As it what plots might look like when reads are looking excellent, passable,...