Julie L

Here are the files. Thank you very much for the help. This is my first time running the program beyond the clean tutorial so I'm still figuring out how to...

Also to answer the questions about MITOBim: I used the two step process (so first MIRA to create a new ref). As for creating a circular contig: I challenged the...

Thank you for your continued help. I reran NOVOplasty with the read length set to 100 bp instead of 150 and now my output contains four "Option" files. If I...

I'm confused by the response. Above you suggested to use 150 bp as the insert size. Is this correct? All the circularized options for the chloroplast assembly also seem to...

The seed I'm using is a mitochondrial gene not found in the true chloroplast genome. The problem is that my chloroplast assemblies contain this gene. In other words, I can't...

It happened with all Options. Here is the merged file. Also happy to send you the full set of input files for the analysis offline . [Merged_contigs_Test_cp_ANN01.txt](https://github.com/ndierckx/NOVOPlasty/files/2563482/Merged_contigs_Test_cp_ANN01.txt)

That would be so great. I've been struggling to get the software running for a few weeks now and clearly still having issues.

I am working on creating a Google Drive folder link that I can share with you with all the data. Thanks! On Thu, Nov 8, 2018 at 12:40 PM Nicolas...

Dropbox link with the input files sent! Thanks again for looking into this.

Hi I am confused why the quick option needs the mirapath? I thought that in the quick option/direct reconstruction (Tutorial II) only MITObim is used?