Julianus Pfeuffer

Results 225 issues of Julianus Pfeuffer

since it recently supports Thermo Raw (I think).

enhancement

E.g. one for Comet, one for Bayesian inference, one for Percolator. Might need new test data since this might be a bit too small.

enhancement

e.g. in SDRF we usually have the tolerances, their units, and the instrument name. BUT: The search engines have restrictions. They usually take only high_res vs low_res for some additional...

enhancement
low-priority

e.g. based on input file size. Especially for RAM of "easy" to estimate processes like file conversion, filtering, switching. Where no additional large data structures are built.

enhancement

e.g. allow list of proteins of interest, reduce labels in the volcano plots etc.

enhancement

**Describe the problem you encountered** The action should trigger on every (forced) push to master+ipynb but does not! Probably due to Gihub's measures to prevent infinite triggers between actions. This...

bug
CI/CD
critical

On the website and or pyopenms docs. Without the need for manual intervention. E.g. put a version file somewhere and both the CI and the docs parse this.

sprint candidate

see e.g. https://github.com/OpenMS/OpenMS/commit/4e41abd4a49052549aa9f4547fb8ed1bd534b14d Where `in_` would lead to invalid target errors. This needs to be done in all "*.pyx" files in the OpenMS/OpenMS repository. Not sure if there are more...

sprint candidate