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Improve default MSstats analyses/plots

Open jpfeuffer opened this issue 5 years ago • 4 comments

e.g. allow list of proteins of interest, reduce labels in the volcano plots etc.

jpfeuffer avatar Apr 14 '20 10:04 jpfeuffer

Can they also be made interactive?

I don't know which R libraries you are using, since I am only familiar with Python based stuff, but would be useful if the labels of lines/dots also showed up when hovering over them etc

Zethson avatar Apr 24 '20 08:04 Zethson

This is in the tools folder but I don't know how to run this automatically for the user since they will need a UI

jpfeuffer avatar Apr 24 '20 09:04 jpfeuffer

Oh, I thought this issue was referring to the HTML report, which could contain interactive elements.

Zethson avatar Apr 24 '20 09:04 Zethson

Yes true there are multiple things to consider:

  • Interactive plots are in theory as simple as ggplotly(ggplot_object)
  • But: The Msstats plots are not designed "clean" enough to do that out-of-the-box
  • Then, if we go interactive, it would be nice if the plots interact with corresponding selections etc., which requires a server-based solution

jpfeuffer avatar Apr 24 '20 10:04 jpfeuffer