Jianshu_Zhao
Jianshu_Zhao
Hello Rosella team, I notice that hdbscan also replies on python but actually there is a beautiful rust implementation (https://github.com/petabi/petal-clustering) and is paralleled when necessary. I am wondering whether it...
Hello Team, parasail_aligner -a parasail_sg_qx_striped_32 -q SILVA_138.1_SSURef_tax_silva_prok_nr_sbsample_half.fasta -f Danish_01.fa -d -t 24 -g parasail.csv for many sequences in query file (-q) and only one in -f file, I noticed that...
Hi, I am not sure how to run a lot of samples on different computer node at the same time and then pool those result to calculate distance matrix any...
Hello Team, With openblas static feature, it can be linked statically but the gfortran itself was linked dynamically (gcc -lgfortran was required to link openblas), e.g, libgfortran.so.5 was actually linked...
Dear densmap tool, Any plan for further supporting the newest version of Numba? There are known issues for Numba when running on ARM64/aarch64 CPU structure. Both umap and trimap are...
fix the compiling error for bytecount.
Hello Team, I test edlib against usearch -usearch_gloal and vsearch --search_global, which is specifically designed for DNA database search based on global alignment. They use large gap open and extension...
Hello Daniel, I am comparing dashing2 with bindash and Mash for metagenome. I am well aware of the fact that canonical kmer was used in Mash, so that for metagenomic...
Hello Daniel, Just want to ask whether there are plans for also implement dartminhash (https://arxiv.org/abs/2005.11547), which is very fast for sparse dataset (genomes, metagenomes), and much faster than bagminhsh according...
Hello Daniel, I am attaching a real-world genome from the global Tara Ocean Metagenomic study, against all GTDB genomes (https://data.ace.uq.edu.au/public/gtdb/data/releases/release207/207.0/genomic_files_reps/gtdb_genomes_reps_r207.tar.gz) to find top 20 best matches in terms of ANI,...