Jianshu_Zhao

Hello Team, I do not see the keep_pruned() and extend_candidate() option in N2 library, where it is impenmented in nsmlib? Thanks, Jianshu

When distance computation is expensive how to gradually build graph

3

Hello pynndescent team, I am in a situation where, distance computation is very expensive (genomic sequence), all versus all distance as input is not possible (it takes forever for all...

Hello granne team, I am wondering whether the angular distance by default can be any other metric distance like L1, L2, Cosine, Jaccard, Hamming distance? Another HNSW implementation provide such...

FilterBam same results with difference minCover and minID

1

Dear Author, I used filterBam to filter bam files for only high coverage and identity mapped reads. However, for different minCover and minID, I have the same coverage depth using...

Help needed . How to parallel RcppANNOY

1

Hello uwot developer, This is the example I am using to testing ANNOY: library(RcppAnnoy) set.seed(123) mnist

Dear megabit team, any possibilities to provide support for macOS m1 chip? It works nice with Intel Macs. Many thanks, Jianshu

Not compiling on MacOS ARM

2

Hello Chirag, I noticed there are sse2neon folder there in the src but I still have the error on macOS ARM: c++ -c -msse2 -g -Wall -O2 -DHAVE_KALLOC -fopenmp -std=c++11...

MacOS support

4

Dear Bwa-mem2 team, Any plan for MacOS, since bwa mem support MacOS. For both ARM and Intel CPU types? Thanks, Jianshu

ARM compiling?

1

Hello team, I still have the msse error: rm -f src/*.o libbwa.a; cd ext/safestringlib/ && /Library/Developer/CommandLineTools/usr/bin/make clean; rm -f obj/*.o *~ core /*~ objtest/*.o rm -f libsafestring.a rm -f safestringtest...

vsearch search_global time complexity

2

Dear vsearch team, I am curious what is the theoretical time complexity for search_global algorithm related to database sequence size (considering the same length for both database sequence and query...