Jianshu_Zhao
Jianshu_Zhao
Hello Dram team, It seems running the DRAM-steup.py is very very slow, more than several days. Downloading uniref90.fasta.gz takes more than 12 hours? wget is very slow, no idea why....
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Dear Team, I am wondering whether there could be support for hamming distance, for example u32 or u64 vector, their hamming distance (strings can alway be transformed into corresponding integers)....
With this --correct option, users can now get almost identical results with orthoANI_usearch. See the information here: https://jianshu93.github.io/blog/ANI-calculator/ Let me know if there any questions. Thanks, Jianshu
### Description of bug Hello spades team, In the case of metagenome assembly (meta mode), there are bacterial genomes that are very similar to each other, e.g., 90% to 95%...
Hello Team, Not a big deal, but some compiling warnings after updated to rust 1.75 nightly: warning: unnecessary parentheses around index expression --> src/final3/functions.rs:114:42 | 114 | ...= u64::from(c[((wyrng(&mut seed)...
Hello Team, It is not supported on aarch64 or (arm64) platform such as macOS M1? Any plan to support it in the future? Thanks, Jianshu
Dear Andrii, This is Jianshu, a Ph.D student in CSE & Bioinformatics, studying probabilistic data structures and their applications in biological sequences analysis. I read your book on probabilistic data...
Dear Anndrii, I am writing to ask about the actually implementation of MinHash, there are 3 different implementations, k-min sketch, bottom-k sketch, which is: a ‘bottom sketch’ strategy, originally proposed...
Dear Phyloflash team, I want to install it but after following the protocol to install from conda (including the step with strict channel), it just take forever and never stop...