Jianshu_Zhao

it is linux. I am using cmake and it is the first situation mentioned. I do not have openmp error. Jianshu

Hello Jeff, I was trying but it does not allow me to run in background with the following error: input file, query file, and stdin detected; max inputs is 2...

Yes！ I need to run it in background to use htop or top. It is a server so I do not have choices. and the query sequence file is very...

Hello Jeff, I still have it, it is really strange (I download the zip of hot fix branch and compile then compile it). I was using: nohup parasail_aligner -a parasail_sg_qx_striped_32...

Do you have the same problem on your side? e.g., running nohup & Thanks, Jianshu

I do not have any problems on MacOS after following exactly the same compiling, which is very strange. Thanks, Jianshu

Just tried, still the same error with < SILVA_138.1_SSURef_tax_silva_prok_nr_new.fasta

Hello Jeff, I am very confused with the output, of the above command used: 0,0,1490,1541,1059,1489,1540 1,0,1535,1541,1097,1534,1540 2,0,1534,1541,1095,1533,1540 3,0,1545,1541,912,1544,1539 4,0,1515,1541,998,1514,1539 5,0,1514,1541,990,1513,1539 6,0,1514,1541,988,1513,1539 which one is alignment score by default? Thanks, Jianshu

Hello Jeff, A quick question: is the score a metric? Especially the triangular rules, for sg mode? Thanks jianshu

Hello Jeff, I found that parasail generates very different results compare to other global alignment tools, such as vsearch and edlib, I used this command: parasail_aligner -a parasail_sg_striped_32 -f Danish_01.fa...