Jianshu_Zhao

It seems arm64 is not supported right now. I also failed building it on M1 Mac Thanks, Jianshu

Also have the same problem here, the viral model is kind of buggy but I have to rebuild the whole database, which I really do not want to. Jianshu

It has been 30+ hours now, still no idea when it will finish. Another solution will be providing and pre-built database, which is much more convenient than building it from...

Hello @wwood, Yes I would suggest so since the corrected flag is more close to the actual alignment-based ANI. We will update the bioconda channel for the newest --correct option...

hello @wwood pre-clustering default is now skani, which is very dangerous because below 82% ANI skani output is 0. I would suggest use finch version of minhash (essential the same...

Tests showed that it works on my m1 pro. Many thanks！ Jianshu

Hello All, I think the answer is not to use that math equation above (also in the Dashing paper) for Jaccard index, which is know to have much larger variation...

Hello Rhys, If you check the paper published recently (On UMAP’s True Loss Function, https://proceedings.neurips.cc/paper_files/paper/2021/file/2de5d16682c3c35007e4e92982f1a2ba-Paper.pdf), you will find that UMAP loss function is kind of strange, which means it strengthens...

Hello Rhys, I think he knows but there are so many papers using UMAP (almost all singe cell RNA seq papers in the last 5 years) to infer cell types....

Hello @rhysnewell , Sorry for the late response. It has been a busy semester for me. I feel like supervised binning is till not a good time. No matter what...