Jianshu_Zhao

Hi @leonmhartman I mentioned the problem to GTDB-Tk team and they solved it today. You can try again now. I am also trying to download the newest database.

Hi @leonmhartman, The gtdb problem is solved, however: --03a: downlad SILVA data-- Now trying to get current silva release version... Traceback (most recent call last): File "/home/jiz322/miniconda3/envs/mdmcleaner/bin/mdmcleaner", line 10, in...

I think it is because the website: https://www.arb-silva.de/fileadmin/silva_databases/current is not working, it was under maintenance. Any idea? Jianshu

let me know what you get, but the website link is not available in a browser, no idea why. Line 23: silva_server = "https://www.arb-silva.de/fileadmin/silva_databases/current" Thanks, Jianshu

Thank you so much. Let's wait and see. I start from scratch, so you know it will take a couple of more hours. Additionally, see my pull request to use...

Let me know if you have questions about this pull request. Many thanks! Jianshu

Hello All, I still have the error for M1 Mac using the sse2 filtered branch (remotes::install_github("terjekv/dada2")): * installing *source* package ‘dada2’ ... ** using staged installation ** libs clang++ -arch...

Hello all, Some questions about the parallel_for section. It is parallelized at each query level right, meaning if I have only one data point to add to the the existing...

Hi @jdwinkler, You can use the bioconda version if you do not want to build from source. But this repo is the most recent version and is consistent with the...

Hi All, Daniel asked me to help with Shebin on this and test if we can merge it. I do not see a problem here but just some tests failed...