IReNA issues

I have an analysis with another tool (e.g. Signac), can I still use IReNA？

1

Hi, I now have the data (10x multiome) for the basic analysis done with Signac, and I want to use it to analyze the specific gene regulatory network. Is there...

LalicJ

Error when following the tutorial

2

Hi, I was following your [tutorial](https://jiang-junyao.github.io/IReNA/scATAC+scRNA) and received the following warnings/error: ```` library(IReNA) Loading required package: pheatmap Loading required package: DDRTree Loading required package: irlba Loading required package: Matrix Loading...

DHelix

About TF motif datasets for other species

4

Hi, do you have any suggestions for building TF motif datasets for other species, like Macaca fascicularis? I see it in the tutorial `user-defined motif dataset which should have the...

LalicJ

Data without pseudotime

Hi, This may be a naive question - Is the pseudotime information absolutely required for IReNA analysis? I'm interested in inferring cell-type-specific regulatory networks from a heterogeneous population (e.g. tumor...

DHelix

sudo run fimoall.sh get permission denied

1

Hi, thanks for the great job! I get an error hoping for your help. In terminal sudo sh ./fimoall.sh Or rstudio ``` ### run the following codes in the R...

Roger-GOAT

data not found

1

When I ran the tutorial of [Regulatory network analysis through intergrating scRNA-seq data and scATAC-seq data](https://jiang-junyao.github.io/IReNA/scATAC+scRNA), I can't found the file named P1_CM_3sample_seurat.rds.

Cosmosren