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Error when following the tutorial

Open DHelix opened this issue 1 year ago • 2 comments

Hi, I was following your tutorial and received the following warnings/error:

library(IReNA)
Loading required package: pheatmap
Loading required package: DDRTree
Loading required package: irlba
Loading required package: Matrix
Loading required package: RcisTarget
Registered S3 method overwritten by 'data.table':
  method           from
  print.data.table     
Warning: multiple methods tables found for ‘aperm’Warning: replacing previous import ‘BiocGenerics::aperm’ by ‘DelayedArray::aperm’ when loading ‘SummarizedExperiment’No methods found in package ‘BiocGenerics’ for requests: ‘as.vector’, ‘clusterEvalQ’, ‘parCapply’, ‘parRapply’, ‘unlist’ when loading ‘monocle’
Registered S3 methods overwritten by 'dbplyr':
  method         from
  print.tbl_lazy     
  print.tbl_sql     


expression_profile <- get_SmoothByBin_PseudotimeExp(seurat_with_time, Bin = 60, method = 'State')
Error in rowMeans(seurat_exp2_state[, PseudotimeBin1[i]:PseudotimeBin1[i + :
'x' must be an array of at least two dimensions
```
Would you give me some tips? Thanks.


DHelix avatar Feb 25 '23 21:02 DHelix