James A. Fellows Yates
James A. Fellows Yates
Yes let's talk then! I've almost finished the template merge too so can be more involved after that too 👍
Woohoo! I'm travelling rest of today and travelling again second half next week, I'll try and slip it in Mon/Tuesday if I can
Dunno what's wrong with the tests @mashehu @ewels :(
Hi @QingDAI0225 do you mind sharing with me the files within the `/work/qd33/nanopore/QD_ptrap_20230908/nf_working/d6/ea361f0f6ef1ab87281a9f42cd2715` directory? You can send them to me privately if you prefer to [email protected] (will be kept confidential)...
OK I think I've identified the problem: the bin IDs in the `checkm_summary` file do not have the file extension, while the others do. I'm not sure why this is...
Trying locally, actually this does not seem to be an issue when running iwth BUSCO at least.
@QingDAI0225 we also inspected with @maxibor and we discussed why you may be missing the 6 CheckM bins. The hypothesis is that maybe some of your CHECKM jobs failed (e.g,...
And also if you can send the `work/` of the CheckM process of one of the bins not in the table, that would also be helpful
So we strongly suspect this is it, and can be confirmed by sending teh `work/` of the CheckM process of your 'missing bins'. Technical details: the CHECKM module has all...
As we've not had any more information I will shut this. Feel free to re-open if it's still an issiue in more recent versions of the pipeline