Jennifer Hillman-Jackson

Htseq_count can fail with RNA STAR input

6

**Tracking ticket** Once the problem is resolved and Main updated (as needed) we can close this out. **Workaround** Use HISAT2 instead of RNA STAR. **Example error** ``` Fatal error: Unknown...

Tool: toolshed.g2.bx.psu.edu/repos/devteam/column_maker/Add_a_column1/1.1.0. Error: ImportError: No module named galaxy_ext.metadata.set_metadata

Enhancement: Don't overwrite menu items in select lists in narrow width views

1

**Describe the bug** Menu items can be written over with the "click to select" message. **Galaxy Version and/or server at which you observed the bug** The Galaxy Server is running...

Masthead covers up the top of all panels after clicking into FastQC report section links

3

**Describe the bug** Masthead covers up the top of all panels after drilling into FastQC report * activity bar doesn't impact * themes do not impact * new in 23.1...

**Use cases** Sharing involves links, and is a distinctly useful feature of Galaxy. Including those associations in an accessible, and integrated, view directly on primary artifacts would be useful and...

Would be nice if when hovering over my bookmarked workflows in the tool panel a little checkmark to un-bookmark, and remove it from that listing, was available directly in the...

toolshed.g2.bx.psu.edu/repos/devteam/kernel_canonical_correlation_analysis/kcca1/1.0.0 Test history (includes tests from both org and eu using the tool test data): https://usegalaxy.org/u/jen-galaxyproject/h/imported-from-archive-test-kernel-canonical-correlation-analysis ORG reports this summary > Conda dependency seemingly installed but failed to build job...

**Describe the bug** I sometimes want to rerun a job and have the output sent to a new history. I also sometimes want to filter the history (tag or keyword...

Visualizations/Charts: msa viewer stalls during data loading

1

**Describe the bug** The MSA viewer will not load at UseGalaxy.org. It will load at other UseGalaxy servers. Interestingly, you can name and save the still-loading visualization, plus generate a...

https://github.com/bgruening/galaxytools/blob/211f182d517e5416ed24f9cc404b717eb7f6471a/tools/blobtoolkit/blobtoolkit.xml#L199 If the Diamond hit input has an empty 7th column (possible!) the Blobtoolkit tool can fail. See https://help.galaxyproject.org/t/problem-on-following-the-post-assembly-qc-workflow/12967