Jennifer Hillman-Jackson
Jennifer Hillman-Jackson
Tool: https://toolshed.g2.bx.psu.edu/view/bgruening/split_file_to_collection/6cbe2f30c2d7 Option: https://github.com/bgruening/galaxytools/blob/dee6a6f4aa8cbee9f81692fc6f3a2e4ad1f3abf6/tools/text_processing/split_file_to_collection/split_file_to_collection.xml#L206 Use case example: The input is fastqsanger.gz. The user wants to break the data up so it will process without hitting memory or runtime limits, or...
Trim Galore! is wrapped around cutadapt. Options include: - update the Trim Galore! wrapper (preferred) - or update the older cutadapt wrapper and add as a distinct tool to public...
**Describe the bug** Can stall or get stuck even in small histories Slightly different from https://github.com/galaxyproject/galaxy/issues/13741 **Galaxy Version and/or server at which you observed the bug** Org: {"version_major":"22.05","version_minor":"1"} EU: {"version_major":"22.05","version_minor":"1"}...
tool_id=toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/1.1.2 The 3rd party AWK tutorial linked in the help section of the tool form no longer exists. What to do? * find an alternative * update the help link...
Pathways add a lot of context! Maybe we should expose them more. Plus makes that view a bit richer visually. Tool Form -> Tutorial -> Pathway  Cheers! PathwayFan
Removed the incomplete/outdated instructions from https://training.galaxyproject.org/training-material/faqs/galaxy/histories_transfer_entire_histories_from_one_galaxy_server_to_another.html At next release (24.N), once process stabilized, expanded, and available at more public servers: write up the instructions for each separately as two new...
tool_id: toolshed.g2.bx.psu.edu/repos/iuc/roary/roary/3.13.0+galaxy2 How the problem presents: Tool can fail when many inputs are given -- or not fail and just produce emtpy outputs, in particular the core alignment. Possible solution...
The MTS repository doesn't have many details, so I wasn't quite sure how to triage this. Please redirect or advise. https://toolshed.g2.bx.psu.edu/view/abaizan/kodoja/d4111d1de76f Request to update the wrapper and make it available...
It is useful for end users to review the RData and Rscript outputs from tools, even when they fail. Why? So they can compare how the inputs and parameters were...
Hi all! I'd like to improve how hub links are labeled when they display as cross links into the [Galaxy Help](https://help.galaxyproject.org) forum. This is an [example topic](https://help.galaxyproject.org/t/maxquant-runs-and-stops-without-result/11961/2?u=jennaj) at Galaxy help...