Jennifer Hillman-Jackson

Not sure if resolved -- both may be orphan tickets we can closeout. @herbercr please see the other issue ticket, it has more details about how we can troubleshoot if...

This came up later and had some discussion. Think is worth figuring out what we plan to do. This is really confusing for users (two versions of "Cut" and the...

@bwlang @bgruening Is this still in progress? Would be very helpful to have the reasons. Tx!

Original version reported: **0.4.1** Version on http://usegalaxy.org (that still does not present useful error message): **0.4.2** Latest version in Tool Shed 6/1/2017 that appears to be the one with @bwlang...

Update - 0.4.3.1 was installed at http://usegalaxy.org. When given a truncated fastq input, the error is still non-specific. > Cutadapt terminated with exit signal: '256'. > Terminating Trim Galore run,...

Me too, thx Peter

@szeplakib I cannot figure out the correct usage either. Tried a few variations. Test history: https://usegalaxy.org/u/jen/h/copy-of-workflow-constructed-from-history-test-history-freebayes-renamed-output Test workflow: https://usegalaxy.org/u/jen/w/copy-of-workflow-constructed-from-history-test-history-freebayes-1 @dannon Could you help us determine if the syntax is wrong...

Hi -- we have a question about this functionality at Ghelp. I had forgotten it was an an open issue! I'm going to cross post to the tools working group...

Hum, perhaps there is a use case for changing the header .. but I can't think of one! :) The alternative bam sort tool works great.

I will let you all decide, just an observation. Maybe clarification in the help about what this option actually does is the best call?