Joshua Charkow

SQLite objected created in a thread can only be used in that same thread

1

 Happens during targeted extraction of test file

It seems that toggling on/off the MS2 traces does not change peak picking with the test example is that correct? It seems toggling on/off MS1 traces changes peak picking ...

Unexpected Spectrum Plot upon zoom in

1

Currently playing around more with plotting spectra. Upon zooming in to the spectra I get an unexpected result. Not sure if this is also present in the streamlit interface. Possibly...

make copyright year dynamic

2

### **User description** this allows the datetime of the copyright to update with the current datetime ___ ### **PR Type** enhancement, documentation ___ ### **Description** - Enhanced the Sphinx configuration...

Feature/speedup parquet export

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Re-implementation of PR https://github.com/PyProphet/pyprophet/pull/111 This uses duckdb for parquet export instead of pandas. This allows for memory and SQL queries to be handled by duckdb which is faster and uses...

# Description 1. Loaders (MzMLLoader and SqMassLoader can accept a list of `rsltsFile` this is useful for automatically plotting features from a different software on the same plot. 2. Auto...

It seems that CI tests got disabled and recent changes might cause some of these tests to fail. Possibly we should enable these in github actions? @singjc

change to always select precursor table so scoring is performed correctly

Use duckdb loading throughout pyprophet

2

With export-parquet, we have an additional dependency of duckdb which allows for fast SQL queries, especially those involving lots of joins. Here roll out duckdb SQL queries in pyprophet for...

# Description Aims to fix https://github.com/Roestlab/massdash/issues/152 where run inference fails with multiple extensions Please delete options that are not relevant. - [ ] Bug fix (non-breaking change which fixes an...