Jaclyn Perrone

For example, letting the developer know if the test server cannot be started

Support both HDFS and NFS/other file systems for BAM files

6

for uploaded BAM files

The pileup view should pop out into a new window

9

...and update its position as the user clicks on different variants in the Examine page. This way the user has a little breathing room to read and filter the VCF...

When comparing two VCFs, there should be a header added to the common variants column that would enable a user to sort by that column. This way the user can...

Sort/filter table by comments column on examine page

3

There should be a header added to the comments column that would enable a user to sort by that column. This way the user can easily find comments made about...

Add fields to comments for reporting

5

Comments should work to improve the filtering/machine learning algorithm*. In order to do this, we will need some standardized data that a free-form text field can't give us. Therefore, we...

Project empty state on Runs page

4

If a user has no projects, we should show an empty that prompts them to create one. 

Show project and caller name associated with each comment on runs page

3

Adding the following metadata to the comments on the runs page will give the user more context: - project name - caller name As a side note, I will be...

A user should be able to delete projects and uploaded files

1

While on the Runs page, I should be able to delete any VCF or BAM file I have uploaded, as well as an entire project.

User should be able to know which reference genome was used in a VCF file

3

Is there a way to state what version of the reference genome a VCF file is using to make its comparison? Two questions: 1. Does this meta data exist in...