Alex Rubinsteyn

Results 31 issues of Alex Rubinsteyn

I'm using a shared embedding layer between multiple lengths of sequence inputs and get the following error: ``` /Library/Frameworks/Python.framework/Versions/3.4/lib/python3.4/site-packages/keras_diagram/diagram.py in ascii(model) 167 168 def ascii(model): --> 169 node = Node(model.layers[-1])...

I often have normal WES, tumor WES, and tumor RNA and would like to call somatic variants in the tumor RNA and filter them by (1) evidence in tumor DNA...

Attempted to follow install instructions from the README, switched to 4.0.3, tried to install Ketrew and got the following error: ``` $ opam install ketrew =-=- Synchronising pinned packages =-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=...

The target states need simplified states for the web UI. For example, `Building` and `Still_building` should probably be shown to the user as the same thing. Similarly, it's not clear...

I'm trying to explore a failed target and in the "Backend details/query" view of the target I see these options: ![screenshot 2016-02-10 15 58 44](https://cloud.githubusercontent.com/assets/48441/12961634/9263ca28-d00f-11e5-9374-c47e9ded7d17.png) Why are there two links...

Currently I can link to a filtered view of the targets page but once I start exploring the dependencies of a target there is no way to attach a URL...

enhancement
UI

Currently I see job start times in GMT: " 22:03:53 GMT", is it possible to instead get them localized to EST?

enhancement
UI

In the help page for web UI filters, I'd like to able to just click on one of the examples and have it apply automatically. Currently I instead have to...

enhancement
UI

Currently, if we kill a node then it's child nodes keep on running. To actually kill the entire tree of dependencies we have to first find them all via the...

enhancement
UI

Currently we have a link to a directory with two MD files and one script (https://github.com/hammerlab/epidisco/blob/master/docs), we should link to the MD file individually (if they are still up to...