Sam Isaacson
Sam Isaacson
Since SciMLBase now supports a Makie receipe we should add doc examples showing how to use it (and verifying it works similarly -- otherwise we should open issues on SciMLBase...
Given that MTK has changed behavior now and is promoting all tunables to a common type, the doc discussion of parameter typing needs to be checked and updated accordingly (or...
With https://github.com/SciML/Catalyst.jl/pull/1001 Latexify tests are broken again, and I am not able to get them working locally (somehow the string generation code just doesn't give tests that pass for me)....
https://discourse.julialang.org/t/compose-sdesystems-in-modelingtoolkit/117054/3 This would require us to accept noise representations internally too, or to use the Brownian feature of MTK (and hence convert to a general "System").
Currently I believe we generate CLE models using ODE ratelaws, but in some cases one might actually want to use the underlying propensity functions. We should both document this more...
Now that the DSL supports ODEs we should update the HH model example to build the whole system at once using the DSL.
And note we currently need to have users call `collect(vec_symbolic_variable)` before passing to `ReactionSystem`.
One issue with MTK symbol names is the need to use the unicode lower plus in hierarchical systems since a period can't be used, i.e. "act₊vol₁₊x". Having a `getname_as_string` function...
Current version: https://docs.sciml.ai/ModelingToolkit/stable/basics/AbstractSystem/ I think it might be helpful to MTK contributors, and downstream libraries building on MTK, to have an official, updated, minimal API for what functions `AbstractSystem`s should...
The tutorial: https://docs.sciml.ai/ModelingToolkit/stable/examples/remake/ is very useful for understanding the new parameter setup, but it would be nice if it could show a way for users to specify an initial guess...