Zamin Iqbal

Results 180 comments of Zamin Iqbal

COBS for 600K genomes

Hi there. Sorry to be a pain but could you raise this issue here https://github.com/iqbal-lab-org/cobs, and we can answer there tomorrow . Can you also give the command you ran?...

Provide the number of k-mers in the query

Output format an excellent idea.

run_indep_wkflow_with_gnu_par hangs after parallel build step before combine

_Good spot_ on possible reason

run_indep_wkflow_with_gnu_par hangs after parallel build step before combine

The whole thing is horribly non-robust. The right thing to do is for run_indep.. to check the results of the previous step before carrying on. And yes, it should stop...

run_indep_wkflow_with_gnu_par hangs after parallel build step before combine

If you are concerned about being able to do this, transfer ownership of this issue to me, and I can do it tomorrow.

run_indep_wkflow_with_gnu_par hangs after parallel build step before combine

THANKS and sorry Henk. Will look,

make MAXK=31 NUM_COLS=1 cortex_var

Hi there, can I ask which version of Cortex you are using? Where did you get it from?

make MAXK=31 NUM_COLS=1 cortex_var

Can you try using git clone with this repo, and see if that fixes it? Am also going to make a singularity container (I guess I should do docker too)...

make MAXK=31 NUM_COLS=1 cortex_var

Hi Emily Can you give the command line you ran and copy the text which describes these 3 files? The output you show is the raw output of the bubble...

Probeset Documentation

Wow - thanks for spotting this. I've just used the tip of master without seeing any problem, how on earth is that possible!? Is this for TB or Staph?