Zamin Iqbal
Zamin Iqbal
Can you give a bit more detail. What exactly was the file it failed on- would it be possible to share it, on this issue if small or via some...
The output of make_prg does contain numbers. The format , I now realise, is not described on the github and we will fix that. Bit if you look at Figure...
Hi there @mthang (cc @LeahRoberts ) - sorry your upload of the pandora PRG has failed, could you try again? Or give it to leah to give ot me?
Hi @mthang - apologies for the slow response on this - I am now engaged! The error message suggests that the PRg is mal-constructed. Could you share the input data...
This is interesting. The error is thrown here https://github.com/iqbal-lab-org/pandora/blob/f7e06605d54981edbeebd8935bd1a6fd47a31fbc/src/localPRG.cpp#L320 and the error, reported in the original bug report - top of page I mean - says "Please check that site...
Just for the record, look at this crazy gene `>EKIOKO_00070.msa ATGACGGT5T6G5ATTTCGAC7T8C7GCGATCGA9C10T9CGCGACAGCGA11CAGCTTC AAG12GACCTTCAAA11GCCAATGCCA13GCAAAAACAAAGCCCTG14TCAAGAACAAGG CGCTT13ATCGACGA15ACTCCACAATCGTTCGGCGAAA16GCTCAGCGAGCGCTCGGCA AAG15GCGCGCGAGGGCGG17ATCGCAGACAGCGCGCGAGCGCCATACCGGCAAAGGTAA GCTGCTGCCG18CGCGCAATCGGCCCGTGAACGTCACACAAGCAAGGGCAAGCTCCTGCC C17CGCGACCGCAT19CCAGCTTTTGC20TCAGCTGCTGA19TCGATGCCGGCAGCCC21 G22C21TTCCTGGAG23ATCGGCA24GTCGGCG23CGCTGGC25A26G25GCCAACGG27 C28A27ATGTATG29AT30GC29GACGAGGCGCC31C32G31GGCGCCGGCATCATATC3 3A34G33GGCATCGGCCGCGT35TG36AT35CCGGCCG37CGAGGTG38TGAGGTC37AT GATCGTCGCCAATGACGCGACGGT39G40A39AAGGGCGGCGCCTATTT41C42T41CCG ATGACGGTGAAGAAACATCTC43C44A43GGGCGCAGGA45G46A45ATCGCCATGCAGA ACCGG47T48C47TGCCCTG49TCTCTATCTTGTCGAT50CCTTTATCTGGTCGAC49AG CGGCGGCGCCAATCT51T52G51CCGCATCAGGCCGA53A54G53GTCTTTCCCGACCGC GA55C56T55CATTTCGGCGCGATCTTCTACAACCAGGC57C58G57CAGATGTCGGCCG AAGGCATT59CCGCAGATC60GCCCAGATT59GCCTGCGTCATGGGAAGCTGCACCGCCG G61TGGC62CGGT61GCCTATGT63GCCCGCC64TCCCGCG63ATGTCCGACGAAACGGT 65C66G65ATCGTGCGCAATCAGGGCACGATCTTCCTTGCCGGCCCGCCGCTGGT67GAA G68CAAA67GCCGCGACCGGCGA69GATCATTTCA70AATCATCTCG69GCCGAAGA71A 72G71CTCGGCGGCGCCGA73G74A73ACCCATGGCCGCCGCTCCGGCGTCGTCGATCAT GT75GGCCGAA76CGCCGAG75AACGACGAACATGCGCTG77TTGCTCGTT78CTTCTGG...
"Size of partition based on site 5 is 1" means it is complaining....actually that's weird, it's complaining at the first site. @mthang , have you tried running your command on...
omg! Well tracked down! I was really confused about how the space got missing.
I'd be interested in the ability not to split them but to discard the smaller incomplete one. I'd like to be able to just get complete gene alleles and essentially...