Zamin Iqbal
Zamin Iqbal
Sorry for this. I have one hack that would allow you to progress for now. 1. Collect a subset of your genomes that runs in a reasonable time - say...
@martinghunt code is here https://github.com/iqbal-lab-org/minos/blob/ed975d1099c6403eff79b04b0d2064eebfa95e73/minos/genotype_confidence_simulator.py
I did wonder about a single header and cpp file , which did this
Happy to discuss tomorrow; is actually not too hard to implement. The decision when we designed the 4way, and when we had not implemented and tested GCP , was just...
Deleted previous rambling post
1. We definitely not doing 24 way illumina at multiple depths, too hard (many samples, different depths) 2. Subsampling and gcp are orthogonal 3. Snippy has essentially zero error, mad...
Yes, i'm reluctant to do option 3 before the paper, because a refactor could take a while, and generate more issues on the way. Let me expand on those options...
I don't disagree (with michael). But let's try and clarify what we can do - i don't think we're that far from being able to do what you want. I...
Basically i think this lib is simple enough that we can go right ahead and map out the full API, and then see what we think of it. Something to...
Hi there . 1. If you run Pandora with just one sample and do not give it a reference genome to use in its vcf, it will map the reads...