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Provide the number of k-mers in the query

Open graceblackwell opened this issue 3 years ago • 3 comments

Could the number of k-mers in the query be included in the output so the user can calculate the percentage of the query in each dataset (or provide the percentage as well)?

graceblackwell avatar Aug 03 '20 13:08 graceblackwell

Maybe we should define a better output format.

bingmann avatar Aug 03 '20 13:08 bingmann

Yeah could be useful! Would be nice to have it write to a file as well. Could do something like bigsi? Though have the query header instead of the query sequence

graceblackwell avatar Aug 03 '20 13:08 graceblackwell

Output format an excellent idea.

iqbal-lab avatar Aug 03 '20 15:08 iqbal-lab