Ilia Minkin
Ilia Minkin
@liaoherui , I see, thanks for reporting, I will fix it.
@liaoherui , Could you please provide the sequences, at least HCV_527, and HCV_528 so that I can exactly reproduce the error and fix it?
@liaoherui , Thank you very much! Unfortunately, I could not reproduce the problem on my own. Could you please provide the whole collection if possible, along with the MAF alignment...
@liaoherui yes, feel free to send the files
BTW, I have a utility script for gluing back GFA into the sequences: https://github.com/medvedevgroup/TwoPaCo/blob/master/src/graphdump/glueGfa1.py
Hi, I think SibeliaZ might be helpful in this scenario, though you will have to find a way to postprocesss the results (or visualize them) to find the roots of...
Hi, thank you for reporting the issue and sorry for the late reply. You can safely remove time from the script, it is just a remnant from the initial version....
> Any possible workaround to work on a cluster and without building the source? I think I can just make a small release this week, it will also incorporate the...
Hi @smallfade, SibeliaZ 1.2.3 that does not depend on time should be in bioconda now.
Hi, Thank you for the suggestion! I will include it in the next release.