Ilia Minkin
Ilia Minkin
Hi @Karimi-81 , do you have root privileges on the machine you are using?
In the meanwhile, I found a similar issue with another project. Could you try a solution described there, i.e. downgrading tbb by running ```conda install tbb=2020.2``` ? Link to the...
Hi, Could you please be a bit more specific, i.e. what particular questions do you have about the output? For reference, more detailed descriptions of the format of the output...
Hi, I think SibeliaZ should be able to handle it. However, it does not produce a pairwise alignment, it computes a multiple alignment instead.
Hi, It could be possible that some of the paths to your input file are incorrect. Could you please check them?
@LLS007 , Thanks for opening the issue. I will get back to you shortly. Thank you, Ilia Minkin
@LLS007 , SibeliaZ consists of several programs that have to be installed to work properly. To answer your question: > cmake .. -DCMAKE_INSTALL_PREFIX= This option sets the path where the...
Hi @motutaj , it seems that the postprocessing program you are trying to run needs every block to contain the reference genome. SibeliaZ does not rely on a reference, so...
Hi @noahaus, We only validated SibeliaZ on a simulated bacterial dataset and a real mammalian one. We did not rigorously validate on a real bacterial dataset since our resources are...
Hi, One possible reason for this behavior are repeats in the genome. SibeliaZ tries to find all conserved blocks and evolutionary relationships between them to the fullest extent. Sometimes it...