Ilia Minkin
Ilia Minkin
Hi @baizixiansheng , There is no such script now. We might add it in the future, but it is very likely that Circos plots made from large outputs will be...
Hi, How do you extract SNV from the blocks?
Could you please specify more details on how you do that? Do you parse the alignment?
Hi all, Thank you for the reports. I will take a look soon.
Hi all, Sorry for messing this up. I removed the patch setting DIR to '', should be fixed in [1.2.4](https://github.com/medvedevgroup/SibeliaZ/blob/master/NEWS.md). Special thanks to @dpryan79 for pointing out the root cause.
Hi, I envisioned this issue coming up at some point. I think there should be an easy fix, I will try to come up with a solution around next week.
> Has this issue been resolved? We are running into a similar problem with >1 million intermediate files generated and getting inode quota errors. Thanks! In progress, stay tuned.
Hi all, Sorry for the delay. Global pandemic corrected some of my plans, but I will try to maintain SibeliaZ and keep it going. I pushed a potential solution here,...
Incorporated in https://github.com/medvedevgroup/SibeliaZ/releases/tag/v1.2.3
@ShoumikSaha , Sorry for the late reply. Unfortunately, SibeliaZ requires large amounts of memory to produce the resulting alignment even for small outputs. This is due to the high memory...