msigdbr

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Add functions update_GO_names, cap_names

4

`update_GO_names` pulls official GO term descriptions from the appropriate OBO file from the Gene Ontology Consortium. Uses `data.table` for fast replacement of values while merging, but can easily be rewritten...

TylerSagendorf

Add shorter GO descriptions?

3

The entries in the `gs_description` column for GO terms are rather long and not ideal for use as human-readable identifiers when plotting ORA or GSEA results. Would it be possible...

TylerSagendorf

Methodology details, and `write.gmt` helper functions?

3

Hi I came across your package which could potentially save me a lot of work so I thank you. Could you publish the details on your methods for converting between...

dereckmezquita

2023 update?

3

Thank you for developing this useful tool. Do you have any plans to update it based on the 2023 release of MSigDB?

mariecrane

Accessing Mouse MSigDB Collections

1

Is there any possibility for the package to support collections that don't correspond to the human collections H, C1, ..., C8? For example accessing MH, M1, ..., M8 listed at...

agdenadel

Problem with dyplr dependency (I think)

1

I am getting this error when trying to use msigdbr: ``` `> msigdbr(species = "Homo sapiens") Error in `select()`: ! :1:5: unexpected symbol 1: Use of ^ Run `rlang::last_error()` to...

rebeelouise

Save the 'entrez_gene' columns in character mode

3

First thanks for this great package! Especially it directly outputs three different gene ID types, which saves a lot of time when switching between different gene ID types. I have...

jokergoo

First release of Mouse MSigDB (v2022.1.Mm)

1

Thanks for making great package. I was wondering do you have any plan to update new released Mouse MSigDB?

thecalab

ozturan