Peter Heringer

Something like this: However, the implementation of this might take some time, since there is no vega-lite plot directly corresponding to this, so more code is necessary. Idea: rotate "rect"...

Yes, displaying a dendrogram requires even more custom code and also some changes on the Rust side to include that information in what is stored in the HTML (currently the...

Hi Andrea, unfortunately currently there is no command to just get the openness of the pangenome, the function is currently only part of the HTML file. However, I should be...

So I've implemented this feature now, but it is still only part of the feature branch [regions](https://github.com/codialab/panacus/tree/regions). If you build this version of panacus, you can get just the alpha/growth...

Which version of panacus are you using?

Unfortunately, version 0.3.3 is not yet available using mamba. Mamba/bioconda is still on version 0.3.0. You could either install the binary release or install from source. The issue should be...

The total node count simply consists of every node of the graph. The node count per sample on the other hand counts the nodes the paths of the sample traverses....

No, this line is not an issue and is in fact expected. The line starting with 0 tells you that there are 18892 nodes with a coverage of 0. If...

Is there any update on this issue? I'm having the same problem (except that I'm using `-N` instead of `-p` for the selection) and unfortunately I cannot use `vg chunk`...