Peter Heringer
Peter Heringer
Hi Taek, the problem is that heaps law as an estimation cannot be used with an ordered histgrowth, so the `-e` parameter of panacus-visualize does not work for these tables....
Hi Taek, seems like there was unfortunately a bug in the panacus-visualize script. I pushed a new version of this script to the main-branch of the repo. If you use...
What's inside the test.yaml? Does the command `panacus report --help` work?
Do you have the files `../simple_files/simple_graphs/t_groups.gfa` and `../simple_files/simple_graphs/t_group2.gfa`? If not could try removing these two hist blocks? So the total file is: ``` - !Hist name: command-hist count_type: Bp graph:...
Is the path `/panthera23.chroms/chr19.gfa` correct? It needs to be either absolute or relative to the directory where you are executing panacus
Can you run the command with `RUST_LOG=debug panacus report ~/test.yaml`
I've just created a [new release](https://github.com/marschall-lab/panacus/releases/tag/v0.3.1) (v0.3.1) that should fix this problem. Could you try it with the new version?
Thanks for the descriptions. Version 0.3.2 ([release](https://github.com/marschall-lab/panacus/releases/tag/v0.3.2)) should fix these issues. Best regards
Hi Taek, the differing base pair counts are explained by the differing graphs. The example was generated using the Minigraph-Cactus graph, while your results are from the PGGB graph. The...
Yes, the tsv and the plots for the PGGB graph should be correct. About the second question: What do you mean with added sequence length? The number of base pairs...