Peter Heringer
Peter Heringer
If the nice-mode is activated and the node space of the GFA file is non-compact, the node_lens vec contains additional zeroes
Add fast mode for edges in a 'nice' graph Idea: instead of HashMap lookup: ``` Vec ^ Edge Id ^ Id of neighboring node ^ Id of first node as...
Look into whether the `update_tables_edgecount` function can be parallelized as it appears to have a significant impact on runtime in certain scenarios.
It might make sense to introduce a parameter to tell panacus whether a graph is a variation graph or a De-Brujin graph. With this we could make sure all commands...
- [ ] Compress tables to store inside HTML, so that file size of HTML report is reduced. - [ ] Use Browser APIs to decompress (gzipped?) tables on download...
With an increasing number of haplotypes, GFA files quickly get very large, this can be a problem during storage, transfer and processing. Due to haplotypes often being very similar, the...
Analysis that looks at path similarity + clustering across regions
Basically remove half of the heatmap as it is redundant to look similar to [StainedGlass](https://github.com/mrvollger/StainedGlass) plots, this should also reduce the load on the html (only slightly).