herber4
herber4
Hello Spades, My assembly is missing about 300 kbp in the final assembly. I am using paired end reads with the --careful option, but have tried many other options for...
Hello RNArtist, Love the visualization and looking forward to following this package as it grows. Can you slow down the zoom in/out feature? if im not careful I can completely...
Hello, I have been unable to successfully download and run vcfkit and have exhausted all options. I have tried the various install methods and even tried changing the primer3.py script...
Hello, I have about 340 RNA seq data sets, what do you recommend is the best method for understanding shared alternatively spliced transcripts among all the samples? Specific question: When...
Dear Pargenes, Is there a feature in Pargenes that allows you to sort trees by the number of taxa in each tree? For example, most clustering programs will output single...
Dear Treeshrink, I have a loci.treefile with about 3800 gene trees. An issue arises due to gene trees with "too many taxa" when really, the genes are split in their...
Loading required package: Rcpp Loading counts from Book1.txt Loading metadata from bam.list Error in `[.data.frame`(counts, , meta$sample) : undefined columns selected Calls: [ -> [.data.frame Execution halted any idea why...
Hi Leafcutter team, great program, it seems like leaf cutter maintenance has slowed down but it would be great to have upstream or downstream annotations for cryptic splice sites. Something...
Hello Unicycler, After running Unicycler my assembly is about 400 kbp short from other completed reference genomes. I am running short paired end reads from two different lanes. Do you...
Hi Psichomics, How would I go about getting the dPSI values generated by rMATs into psichomics? Best, Austin