leafcutter_DS halted

[herber4]

Loading required package: Rcpp Loading counts from Book1.txt Loading metadata from bam.list Error in [.data.frame(counts, , meta$sample) : undefined columns selected Calls: [ -> [.data.frame Execution halted

any idea why this would happen? My input files are the same as used in the tutorial

[jaempawi]

I'm having the same issue. Any update?

[herber4]

yes, make sure the sample names in the meta data file are the same as what's in the counts table. in the case of the example above, you can: cat Book1.txt cat bam.list

then edit the names in the bam.list to match the sample names in the Book1.txt