Guido Hooiveld

Could you please add the upstream-code that results in this error? Related to this, to reproduce the error, would it be possible to share your input data (as R-object)? Also...

Thanks for providing the code. I could reproduce the error. ``` > result # # over-representation test # #...@organism Homo sapiens #...@ontology BP #...@keytype SYMBOL #...@gene chr [1:100] "ABCC4" "ABHD2"...

See here for a pointer: https://github.com/YuLab-SMU/clusterProfiler/issues/668

For the archive / completeness also a link to a similar question: https://github.com/YuLab-SMU/clusterProfiler/issues/731

Using the included example data your code is working for me; be sure to also explicitly load the `library(ggplot2)`! Also not that most of your clusters are empty! Thus no...

I agree that this is not (yet) documented! However, you can use the approach explained in this post for the `cnetplot`. https://github.com/YuLab-SMU/enrichplot/issues/302#issuecomment-2517971618 Key thing to know is that since the...

In principle there is no limit! Yet, if you print your object to the screen, and the size of the plotting window in `R` is (too) small, not everything can...

How do you define 'empty'? Nothing is plotted? Could it be no gene sets survive your significance cut-offs? What happens if you set these at 1 (for testing)? What is...

I see. It is difficult to provide help if not all variables/inputs are know. Anyway: based on the error that was posted above ( `/Volumes/Builds/R4/R-4.3.0/src/include/Rinlinedfuns.h:537`) I deduce you are running...

A quick note for now: your version output shows that you are running an old `Bioconductor` installation (`3.17`, current is `3.20`) together with the Github version of `clusterProfiler` (`4.15.1.1`, current...