Guido Hooiveld

AFAIK the function `findPathClusters` has never been part of `DOSE`, but is rather included in the package `aPEAR` ([here](https://cran.r-project.org/web/packages/aPEAR/index.html)). Note that `aPEAR` is also developed by another group than the...

@Lucyyang1991: I would recommend you update your R and Bioconductor installations to their latest versions, since your (my) code then still is running fine. Please note that some warnings are...

@Lucyyang1991 The code you just posted still/again works fine for me... However, after comparing your `sessionInfo()` with that of mine I noticed that you are indeed running the latest version...

For what it is worth: using the output of the code from the `enrichGO` help page, `View` is working fine for me in fresh sessions of both 'plain' R, and...

I kindly would like support this feature request, also because of this thread at the Bioconductor support pages: https://support.bioconductor.org/p/9146375/

Thanks for adding support for this, but unfortunately it doesn't work yet.... ``` > library(clusterProfiler) > library(org.Hs.eg.db) > library(enrichplot) > library(ggplot2) > > data(geneList, package="DOSE") > > set.seed(22) # for...

You will have to update `enrichplot`; note that the fix is not available in v1.22 (= release version) that you are using. ``` > BiocManager::install(c('YuLab-SMU/enrichplot'), force=TRUE) > > packageVersion("enrichplot") [1]...

If you would like to show in the `emapplot` the same gene sets as in the` dotplot`, one option is that you: 1) explicitly assign the output (=dotplot) to an...

When posting, please format your code! Select that text, and use the `` button to format as code. I could reproduce your problem with the provided `gse` object. Combined with...

It is not clear to me how your question relates to the `dotplot` function from `clusterProfiler` / `enrichplot`... I guess you posted at the wrong GitHub page; you rather should...