Guido Hooiveld

Sorry, it would be better to show the output from the 3 lines of code below. Note that I save the `dotplot` to object `p`. This has the advantage that...

Would you be able to share the object `Kegg_enrich`? By doing something like `save(Kegg_enrich, file="kegg.results.RData")`

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Without having access to your input file `Necha3_core_GO` it is difficult to pinpoint what exactly the cause is of the error. Yet, based on your code I wonder why you...

FWIW: it is working in my hands.... !? ``` > library(clusterProfiler) > data(geneList, package = "DOSE") > de yy goplot(yy) > ```  ``` > BiocManager::valid() [1] TRUE > >...

One way of achieving this would be by a 'simple' query of the` OrgDb`: ``` > ## load library > library(org.Dm.eg.db) > > ## extract the 'keys' (= geneid) that...

I don't have much experience with Docker, but FWIW: I am able to update `yulab.utils` to its latest version (0.1.6) using `BiocManager` (despite `yulab.utils` being hosted on CRAN and not...

Since apparently there is no `OrgDb `for your organism available, could you show the code you used to generate your results? Thus how as `EnrichR.KO` been generated? You likely used...

... and of `y` and `as.data.frame(y)[1:5,]` ?? Please format your code!

BTW, it works in my hands... See below for some reproducible code mimicking what you try to achieve, and I would suggest you compare it with what you use as...