Guido Hooiveld

Just chiming in with some issues and 6 (small) questions regarding fine-tuning of the new functionality... See below for code + questions. ``` > ## Load required libraries > library(clusterProfiler)...

@ChihYingLu : that is a good question, and AFAIK this is not possible (yet?). @GuangchuangYu : could you please have a look at this?

It is not clear to me what exactly you try to achieve. To increase your chance of getting more feedback I suggest your provide some reproducible code and a picture...

Aha, I got your point. I have never prepared such similarity space plot before, but I believe I can reproduce your problem. That is, unfortunately, I also don't know how...

Aha, I now understand your issue; I observe the same as you do. That is: in an older version of `enrichplot`, the `ssplot` is generated correctly, but in an newer...

I have contacted Guangchuang Yu (@GuangchuangYu), the maintainer of `enrichplot`, regarding this issue, so I assume he will fix this. I am not able to say anything regarding ETAs... Note...

@GuangchuangYu: Thanks for having a look at this! Unfortunately the latest GitHub version seems to have introduced some other bugs with `ssplot`... One is on using an `unused argument`, and...

Added: for completeness / reference the output generated by `enrichplot` `1.25.3` (and not `1.25.5`). Using the same code as above: **ssplot:** ``` > ssplot(res2, color = "NES", group_legend=TRUE) Warning messages:...

Thanks for the updates, yet it still isn't working for me... **ssplot:** Error still is thrown regarding clustering method.... ``` > ssplot(res2, color = "NES", group = TRUE) Wrong clusterFunction...

> maybe you can wait for the new release of Bioconductor, so that our session info is similar with all are latest release versions. I updated to the new (latest)...