Guido Hooiveld

Everything points to something not being OK with your aggregated input `geneList`. Please double-check it! Please note that performing GSEA with user-defined gene sets through the `compareCluster` function works as...

Ehm, that is weird. `ggtangle` is available for `R-4.2.2`: https://cran.r-project.org/web/packages/ggtangle/index.html Could you please start a fresh R session, and copy/paste your error + output `sessionInfo()`?

Note that you applied the function `simplify()`, that removes redundant terms. Do the results in `data_GO` look fine? Thus, are all gene sets / GO categories comprised of at least...

I can reproduce this error. The information on the help page of `gofilter` is rather limited, but if you run this function on the output of GO enrichment analysis of...

AFAIK this is currently not possible. Yet, I think this would be easy to implement, because in this line of the code it is determined which values are plotted. It...

Note that I am not the developer, but I have never seen this error myself or being posted here... Obvious question: what happens if for the argument `gene` a simple...

Note that you are using an old version of `clusterProfiler` `(4.10.0`, current is `4.143`). Moreover, it seems that your installation uses mixed Bioconductor packages. Note that `clusterProfiler` `v4.10.x` is compatible...

Great, thanks for your willingness to do this! BTW, out of curiosity, how did you check this / were not able to confirm?

Being curious: was the BGI team able to provide the adapter sequences?

Kind reminder; I am about to receive another BGISeq data set. Thanks!