deepStats

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I have these wilcoxon plots showing significant p-values plotted, but what is the actual value? Can the package report the p-value per comparison as text?

bhanratt

bootstrap pdf empty when trying to use personalized colors

1

Hi! I've been trying to personalize the colors of my bootstraps plots, and while it worked perfectly for the dsCompareCurves --comparison regions, no plot is generated when I use dsCompareCurves...

ghost

`print_help` command is wrong

1

In `dsCompareCurves`, in each line where it says: ``` print_help( opt_parser ) ``` e.g. [here](https://github.com/gtrichard/deepStats/blob/e3685a08db9d10bcb4f1b1742d77bbccfa4656cf/bin/dsCompareCurves#L97) the line should probably say ``` parser$print_help() ``` At least in [`argparse` v2.0.3](https://www.rdocumentation.org/packages/argparse/versions/2.0.3/topics/ArgumentParser) Simple Find...

lukauskas

bootstrap plots

4

Hi, What are the width of regions on bootstrap plot? How the intervals are getting calculated? Also, Is there a way to do some statistic on the difference between 2...

LeilyR

Support of gz / npz format as input

5

Would be nice if the `gz` can be used as input, `txt` files can get so big. I have a matrix on fly which is 14G in txt as opposed...

LeilyR

After generating profiles of my RNA-seq results for some defined regions (genes of interest) in scaled-regions mode, I wanted to see whether the difference I observed is significant. I have...

uerdogdu

Hi, When installing and running the galaxy wrapper that is present in the shedtool (version 0.3) I get empty graphics. When running the same data on the command line using...

cche