Gabriel Renaud comments

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                                            Gabriel Renaud

Support compressed fasta files as input for indexing

however, this seems to work: `genmap index -F

Support compressed fasta files as input for indexing

also write the bed+wig as bgzipped would be good.

GenotypeGVCFs: Add ability to convert current (0/0) genotype format to standard (./.) format

yet another message to support reverting to good old ./. for missing genotypes and 0/0 for homozygous reference.

long command lines in header

I think I solved by just adding if((*tokenIter).empty()) continue; after each for ( ; tokenIter != tokenEnd; ++tokenIter ) { for: ParseHDLine ParseSQLine ParseRGLine ParsePGLine

error when compiling on ubuntu 22.04

Hi Martin, My apologies that you're having problems compiling! I I just compiled the program and it compiled fine. I I think the disconnect is from the version of C++:...

error when compiling on ubuntu 22.04

but do you have zlib within your conda env?

avoid prefix in output

My apologies for the delay in replying. Can you try: /path/directory/fileprefix ?

error when compiling on ubuntu 22.04

you ran: conda install -c anaconda zlib

error when compiling on ubuntu 22.04

ok I am really bad at conda, can you use the static bin for now?

avoid prefix in output

My apologies, I should have been more verbose, I means that if you want as output: `/path/directory/fileprefix `use `-o /path/directory/fileprefix `