Gabriel Renaud
Gabriel Renaud
I think this is very likely due to the fact that your root is undefined, I can add an option to forego the root but is this what you want?
I have added a warning now. I could add an option to simply dump the populations without the root but do people actually do this?
Is this fine? Can I close the issue?
Same as the other issues you opened, could you also post your OS and g++ --version
Hello! I managed to replicate the error using: `glactools bplink2acf --fai human_g1k_v37.fasta.fai afghan > /dev/null ` `bplink2acf: WARNING: The reference allele between the EPO/FASTA (G) was not found in the...
This is not a bug, it is a safeguard feature to make sure that the consistency between the reference and the bim file is respected. How is it possible that...
The solution is to try to understand why there is a SNP without the reference allele being present in your .bim file and where the bases do not match UCSC....
Thank you for your interest in our software! I will transform the different bams to acf one by one and then merge them either via union or intersection. Hope this...
Hello! Thank you for your interest in my software! My apologies for the delay in replying I'm currently on paternity leave. This is not really a bug, it is more...
That is strange. It seems to be working for me: gcc -g -Wall -O2 -I. -I../htslib -I./lz4 -c -o amplicon_stats.o amplicon_stats.c gcc -g -Wall -O2 -I. -I../htslib -I./lz4 -c -o...