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Published 20 hours ago • verified publisher icon cpockrandt

Support compressed fasta files as input for indexing

Open cpockrandt opened this issue 4 years ago • 3 comments

cpockrandt avatar May 08 '20 06:05 cpockrandt

I second this enhancement.

grenaud avatar Mar 23 '24 21:03 grenaud

however, this seems to work: genmap index -F <(zcat input.fa.gz) -I output_dir

grenaud avatar Mar 24 '24 05:03 grenaud

also write the bed+wig as bgzipped would be good.

grenaud avatar Mar 26 '24 06:03 grenaud