Gabriel Renaud
Gabriel Renaud
Could you send me a full command line? Ideally with the test data provided with the software.
I will mark your email as unread. I am away and my internet is extremely limited and intermittent. On Dec 21, 2016 02:02, "Jon Palmer" wrote: > On Mac, seems...
Can you try modifying the -o option to be: -o testData/outdata
dear klr123, sorry for the late reply. I have added an error message in the code about the number of opened file descriptors and the maximum number of file descriptors...
really? How many read groups do you have? What is your OS?
strange, can you do a ulimit -a?
@dangeles Did you get a chance to test this? I suspect there is a discrepancy on your system between the user limit and the system limit.
two follow-up questions: 1) You have debian or red hat? 2) can you give me the output of: `ulimit -Sn` and `ulimit -Hn` In the meantime, could you transform your...
can you privately send me a drop box link to your index list and files? Also, if you want to get ahead, I would simply use my fastq2bam (https://github.com/grenaud/BCL2BAM2FASTQ/tree/master/fastq2bam), demultiplex...
Those are not error messages but simply warnings. It means that TCGCCTTA was used by several reads groups. But I guess that is bound to happen if you have more...