Gabriel Renaud

ggtree collapsed clade+images

1

I posted this on biostars but I am not sure if it is a feature request or it is already possible. In ggtree you can add images to tips as...

For BWA mem (or aln). Would it be possible to read the input as unaligned BAM? If we have a mix of merged reads as single-end reads and unmerged reads...

does not work with file descriptors?

1

I tried pipping from a command to dragmap, I get: "std::exception::what: fastq-file1 or bam-input must point to an existing fastq file" is there any reason why? I specify -b.

does --num-threads work?

4

I tried specifying --num-threads but it seems that it takes all available threads by default, it there any way to change this behavior?

This is for the vgan package, a program to do pangenomics using vg. ---- Please read the [guidelines for Bioconda recipes](https://bioconda.github.io/contributor/guidelines.html) before opening a pull request (PR). * If this...

Hello BWA-mem2 team. Would it be possible to handle unaligned BAM as input? This unaligned BAM file might have single- or paired-end and they would be processed simultaneously.

The style does not have a compatible entry for the species supported by

2

Hello, I am trying to run ichorCNA and I get: `Error in seqlevelsStyle(as.character(x)) : The style does not have a compatible entry for the species supported by Seqname. Please see...

I added "-lssl -lcrypto" to the compilation line, I was not able to compile under Ubuntu.

‘KALIGN_PACKAGE_NAME’ undeclared (first use in this function)

3

For kalign_v3.4.0 I am getting: test.c:14:35: error: ‘KALIGN_PACKAGE_NAME’ undeclared (first use in this function) 14 | fprintf(stdout,"%s %s\n", KALIGN_PACKAGE_NAME, KALIGN_PACKAGE_VERSION);

00h00m00s 0/0: : ERROR: [Errno 2] No such file or directory: 'start'

4

Hello! I tried: cd MoMI-G yarn command not found, then I did: sudo apt install cmdtest yarn yarn start and got: 00h00m00s 0/0: : ERROR: [Errno 2] No such file...