Gisela Gabernet
Gisela Gabernet
 [pipeline references for citing](https://trello.com/c/2zbyfyzg/12-pipeline-references-for-citing)
 [nf-core lint](https://trello.com/c/OycsJoWR/10-nf-core-lint)
Ok thanks for checking it out!
wow, that is speed! Thanks for addressing this!
This is solved now for me!
Hi, I'll work on CITE-seq support using `cellranger multi`, there are example datasets and I've done this analysis before. For `alevin-fry`, I'll let someone else with more experience work on...
yes, we will not need `kallisto bus` and `bustools` for now as the `kb` modules are there
Thanks @johanneskoester! Yes exactly, in that benchmark I included `Sarek 2.7` with variant callers `Strelka2`, `HaplotypeCaller` and `Freebayes`, as only germline variant calls are benchmarked. The purpose of that benchmark...
also to clarify, this is done also through a GitHub actions workflow (https://github.com/nf-core/sarek/blob/master/.github/workflows/awsfulltest.yml), but this action just submits the Sarek run to AWS batch via Nextflow Tower. We've already added...
It's part of the GitHub action yml, you can specify to trigger any GitHub action only on certain actions, e.g. releases. This one also has a trigger button, so that...