Gisela Gabernet
Gisela Gabernet
@nf-core-bot fix linting
@nf-core-bot fix linting
Actually this would be important only in the case that the files are initially provided to the pipeline with a samplesheet (e.g. multiple fastq files to analyze, each of them...
As I understand it, this module is for converting a GTF file to an annotation table. So within a pipeline, it will be called just once on the GTF file...
ok well if you can see the use to the `meta` map in the module, then it can always be provided as an empty list to the channel if not...
Hi @rolivella , thanks for adding the test data! Could you have a look at the `README.md` and add the data in the corresponding subfolder (e.g. `proteomics`)? Also a short...
Hi @rolivella, checking this PR again, we try to keep an orderly folder structure, so that it will be easy to find the test data by everyone. It seems like...
In that case you can add a subdirectory under `proteomics` with the species name, and add your test data underneath. So that other proteomics datasets can follow the recommended structure...
Great, looks good to me then! @JoseEspinosa is there any other changes that you wanted there?
The logic of the config looks good to me, just had one comment but not so critical. Did you test it for some runs and is it working? Then we...