go-annotation
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geneontology
This repository hosts the tracker for issues pertaining to GO annotations.
Going forward, I will add problems to this Googlesheet: https://docs.google.com/spreadsheets/d/1AME11i0L9TtGqMINUECFKgchKfZWNdk7RvaGM6VyeBY/edit#gid=0
* **PTHR ID & PTN node:** PTN000122119 (PTHR11118) * **Sequences with problematic annotation (ID + gene/protein name):** Human RTCB and orthologs. * **Type of Issue: Erroneous source or erroneous propagation,...
List is here: https://docs.google.com/spreadsheets/d/1XWNuM6hlhVBsvogbMw5pfxuDs31Z1AYC4N3HJpxJgIg/edit#gid=0 - 528 families - 242 GO terms
Dear all, The proposal has been made to obsolete GO:0030792 methylarsonite methyltransferase activity (with replacement) see https://github.com/geneontology/go-ontology/issues/27410. Experimental annotations that need to be reviewed are here: https://docs.google.com/spreadsheets/d/1pPYyt8V620yPAv6lsfwq9nd-Z0LqSHf3UaMj_Ks7X9E/edit#gid=0 Impacted groups: [LIST...
GO:0009991 response to extracellular stimulus GO:0031668 cellular response to extracellular stimulus GO:0032104 regulation of response to extracellular stimulus GO:0032105 negative regulation of response to extracellular stimulus GO:0032106 positive regulation of...
Reviewing the annotation intersection violations alerted us to: https://amigo.geneontology.org/amigo/reference/PMID:12485443 This paper describes plasma membrane lipid profiling, and as such isn't suitable to make an annotation to "lipid metabolism". There is...
Dear all, The proposal has been made to obsolete GO:0009991 - response to extracellular stimulus see https://github.com/geneontology/go-ontology/issues/27020 Experimental annotations that need to be reviewed are here: https://docs.google.com/spreadsheets/d/16V38dwLL3ofgw_MWuxUCHyGYZ24Ji_pySil4UtAMA3I/edit?usp=sharing Impacted groups: RGD...
When this term 'borate channel activity' is available: https://github.com/geneontology/go-ontology/issues/27487 The TAIR annotations to GO:0046715 active borate transmembrane transporter activity for UniProtKB:Q8LAI1 ; NIP7-1 PMID:21710975 UniProtKB:Q9SAI4 ; NIP6-1 PMID:18952773 UniProtKB: Q9SV84...
As part of our QC, @LiNiMGI and I noticed that there are annotations not passing because they have 'invalid' relations in annotation extensions. Here is the list: Invalid Relation in...
* **PTHR ID & PTN node:** PANTHER:PTN004606439 UniProtKB:Q9P7H0 nhp2 part_of GO:0022625 cytosolic large ribosomal subunit ECO:0000318 IBA GO_REF:0000033 MGI:MGI:1343877 more... 284812 Schizosaccharomyces pombe (strain 972 / ATCC 24843) GO_Central This...
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This repository hosts the tracker for issues pertaining to GO annotations.